Gene/Marker
|
Descriptor
|
q
|
Speltoid spike
|
QTL1-2RL, 5RL, 7R
|
Flowering time, days after sowing (292,302,520)
|
QTL2-2R
|
Number of spikes per plant (292,302)
|
QTL3-5RL2.3
|
Plant height of main tillers (292,302,496,499)
|
QTL4-5RL2.3
|
Peduncle length of main tillers (292,302)
|
QTL5-6R
|
Number of florets per spike of main tillers (292,302,361)
|
QTL6-2R
|
Number of grains per spike of main tillers (292,302,361)
|
QTL7-2R, 5RL
|
Spike yield of main tillers (302,361,520)
|
QTL8-2R
|
Thousand grain weight (302,499,506)
|
QTL9-5RL, 6RL
|
Straw yield (302)
|
QTL10-4RL
|
Rfclb restorer CMS (311)
|
QTL11-6RS
|
Rfc2 restorer CMS (311)
|
QTL12-2R, 4R
|
Drought tolerance (338)
|
QTL13-1RS14
|
Number of seeds per spikelet (in wheat) (515)
|
QTL14-1RL16
|
QChc.uas-1R.1,Chc1, Chlorophyll content in leaves (346,404)
|
QTL15-3RS16
|
QChc.uas-3R.1, Chc2, Chlorophyll content in leaves (346,404)
|
QTL16-4RL16
|
QChc.uas-4R.1,Chc3, Chlorophyll content in leaves (346,404)
|
QTL17-5RL16
|
QChc.uas-5R.1, Chc4, Chlorophyll content in leaves (346,404)
|
QTL18-5RL16
|
QGar.uas-5R.1, Gar1, Sensitivity of seedlings to gibberellic acid (346,404)
|
QTL19-1RL16
|
QGar.uas-1R.1, Gar2, Sensitivity of seedlings to gibberellic acid (346,404)
|
QTL20-7RL16
|
QGar.uas-7R.1, Gar3, Sensitivity of seedlings to gibberellic acid (346,404)
|
QTL21-1RS16
|
QAbr.uas-1R.1, Abr1, Sensitivity of seedlings to abscisic acids (346,404)
|
QTL22-2RS16
|
QAbr.uas-2R.1, Abr2, Sensitivity of seedlings to abscisic acids (346,404)
|
QTL23-5RL16
|
QAbr.uas-5R.1, Abr3, Sensitivity of seedlings to abscisic acids (346,404)
|
QTL24-1RS16
|
QAmy.uas-1R.1, Amy1-1, Activity of alpha-amylase (404,407,430)
|
QTL65-1RS16
|
QAmy.uas-1R.2, Amy , Activity of alpha-amylase; marker intervals Xiag95–Xapr1.5, Xubp19–Xem1.27 (430)
|
QTL88-1RL16
|
QAmy.uas-1R.1, Amy , Activity of alpha-amylase; marker interval Xapr1.1–Xbcd442 (430)
|
QTL66-1RL16
|
QAmy.uas-1R.3, Amy , Activity of alpha-amylase; marker interval Xapr1.12–Xapr1.11 (430)
|
QTL25-2RS16
|
QAmy.uas-2R.1, Amy2, Activity of alpha-amylase (404,407)
|
QTL67-2RS16
|
QAmy.uas-2R.2, Amy , Activity of alpha-amylase, marker intervals Xapr2.24–Xapr2.22, Xpsr900–Xem2.10 (430)
|
QTL75-2RL16
|
QAmy.uas-2R.3, Amy , Activity of alpha-amylase, marker interval Xapr2.12–Xpsr901 (430); coincides with preharvest sprouting locus Amy1; marker interval Xpr181-1200–Xis2.1 (473)
|
QTL26-3RS16
|
QAmy.uas-3R.1, Amy3, Activity of alpha-amylase (404,407)
|
QTL68-3RS16
|
QAmy.uas-3R.2, Amy , Activity of alpha-amylase, marker interval Xapr3.14–Xapr3.16 (430)
|
QTL76-3RL16
|
QAmy.uas-3R.1, Amy , Activity of alpha-amylase; marker interval Xubp20–Xapr3.3 (430) coincides with preharvest sprouting Phs1; marker interval Xpr665-420–Xis09-500 (473)
|
QTL27-3RL16
|
QAmy.uas-3R.2, Amy4, Activity of alpha-amylase (404,407)
|
QTL69-4RS16
|
QAmy.uas-4R.2, Amy , Activity of alpha-amylase, marker interval Xapr4.15–Xapr4.16 (430)
|
QTL70-4RL16
|
QAmy.uas-4R.1, Amy , Activity of alpha-amylase; marker interval Xapr4.25–Xapr4.26 (430)
|
QTL77-4RL16
|
QAmy.uas-4R.3, Amy , Activity of alpha-amylase; marker interval Xpsr167–Xpsr899 (430)
|
QTL28-5RS16
|
QAmy.uas-5R.1, Amy5, Activity of alpha-amylase, (404,407)
|
QTL71-5RS16
|
QAmy.uas-5R.2, Amy , Activity of alpha-amylase; marker intervals Xapr5.13–Xapr5.14, Xpsr1327–Xubp3 (430)
|
QTL87-5RL16
|
QAmy.uas-5R.1, Amy , Activity of alpha-amylase, marker interval Xapr5.2–alpha-Amy3, Xapr5.2–alpha-Amy3 (430); coincides with preharvest sprouting Phs2; marker interval Xpr215-480–Xis43-810 (473)
|
QTL29-5RL16
|
QAmy.uas-5R.2, Amy6, Activity of alpha-amylase (404,407)
|
QTL72-5RL16
|
QAmy.uas-5R.3, Amy , Activity of alpha-amylase; marker interval Xapr5.24–Xapr5.2 (430); 5RL = Xrms1115, Xscm74, Xscm77 (479)
|
QTL78-6RS16
|
QAmy.uas-6R.2, Amy , Activity of alpha-amylase; marker interval Xpsr106-1–Xem6.11 (430); coincides with preharvest sprouting Phs3; marker interval Xapr6.43-–Xapr6.41 (473)
|
QTL30-6RL16
|
QAmy.uas-6R.1, Amy7 , Activity of alpha-amylase; marker interval Xscm46–Xapr6.7 (404,407,430)
|
QTL73-6RL16
|
QAmy.uas-6R.1, Amy , Activity of alpha-amylase; marker interal Est5–Xpsr454 (430)
|
QTL74-7RS16
|
QAmy.uas-7R.2, Amy , Activity of alpha-amylase; marker interval Xopq4a–Xapr7.25 (430)
|
QTL31-7RL16
|
QAmy.uas-7R.1, Amy8 Activity of alpha-amylase (404,407)
|
QTL32-7RL16
|
QAmy.uas-7R.2, Amy9 Activity of alpha-amylase (404,407)
|
QTL33-3RL
|
QHt.uas-3R.1, Ht1, Plant height (404,405)
|
QTL34-5RL
|
QHt.uas-5R.1, Ht2, Plant height (404,405,496)
|
QTL35-5RL
|
QSl.uas-5R.1, Sl1,Spike length (404,405,499)
|
QTL36-2RL
|
QTgw.uas-2R.1,Tgw1, Thousand grain weight (404,405,499,506)
|
QTL37-3RL
|
QTgw.uas-3R.1,Tgw2, Thousand grain weight (404,405,499,506)
|
QTL38-5RL
|
QTgw.uas-5R.1,Tgw3, Thousand grain weight (404,405,499,506)
|
QTL39-2RS
|
QKl.uas-2R.1,Kl1, Kernel length (404,405)
|
QTL40-3RL
|
QKl.uas-3R.1,Kl1, Kernel length (404,405)
|
QTL41-5RL
|
QKl.uas-5R.1,Kl2, Kernel length (404,405)
|
QTL42-1RS
|
QKt.uas-1R.1,Kt1, Kernel thickness (404,405)
|
QTL43-2RL
|
QKt.uas-2R.1,Kt2, Kernel thickness (404,405)
|
QTL44-3RL
|
QKt.uas-3R.1,Kt3, Kernel thickness (404,405)
|
QTL45-4RS
|
QKt.uas-4R.1,Kt4, Kernel thickness (404,405)
|
QTL46-5RL
|
QKt.uas-5R.1,Kt5, Kernel thickness (404,405)
|
QTL47-4RS
|
QHd.uas-4R.1,Hd1, Heading time (404,408)
|
QTL48-5RL
|
QHd.uas-5R.1,Hd2, Heading time (404,408,496)
|
QTL49-2RL
|
QFl.uas-2R.1,Fl1, Length of flag leaf (404)
|
QTL50-4RL
|
QFl.uas-4R.1,Fl2, Length of flag leaf (404)
|
QTL51-3RL
|
QSinl.uas-3R.1,Sinl1, Length of flag leaf (404)
|
QTL52-5RL
|
QSinl.uas-5R.1,Sinl2, Length of flag leaf (404)
|
QTL53-5RS
|
QSint.uas-5R.1,Sint1, Thickness of 2nd internode (404)
|
QTL54-7RL
|
QSint.uas-7R.1,Sint2, Thickness of 2nd internode (404)
|
QTL55-2RS
|
QKns.uas-2R.1,Kns1, Number of kernels per spike (404,499)
|
QTL56-3RL
|
QKns.uas-3R.1,Kns2, Number of kernels per spike (404,499)
|
QTL57-5RL
|
QKns.uas-3R.1,Kns3, Number of kernels per spike (404,499)
|
QTL58-3RS
|
QVisc.uas-3R.1,Visc1, Number of kernels per spike (404,406,499)
|
QTL59-3RS
|
QVisc.uas-3R.2,Visc2, Number of kernels per spike (404,406,499)
|
QTL79-1RS16
|
QPhs.uas-1R.2; Preharvest sprouting; marker interval Xapr1.5–Xapr1.22, Xem1.20–Xem1.27 (430)
|
QTL60-1RL16
|
QPhs.uas-1R.1; Preharvest sprouting; Ot1-3, additive gene action; marker interval Xapr1.18–Xapr1.17 (416,430)
|
QTL61-2RL16
|
QPhs.uas-2R.1; Preharvest sprouting; Ot1-3, dominant gene action; marker interval Xapr2.15–Xapr2.20 (416,430,473)
|
QTL85-2RL16
|
QPhs.uas-2R.3; Preharvest sprouting; marker interval Xapr2.12–Xpsr901 (430); coincides with preharvest sprouting locus Amy1; marker interval Xpr181-1200–Xis2.1 (473)
|
QTL80-3RS16
|
QPhs.uas-3R.2; Preharvest sprouting; marker interval Xapr3.14–Xapr3.16 (430); coincides with preharvest sprouting Phs1; marker interval Xpr665-420–Xis09-500 (473)
|
QTL81-4RL16
|
QPhs.uas-4R.1; Preharvest sprouting; marker interval Xapr4.25–Xapr4.26 (430)
|
QTL82-5RS16
|
QPhs.uas-5R.2; Preharvest sprouting; marker interval Xapr5.13–Xapr5.14 (430)
|
QTL86-5RL16
|
QPhs.uas-5R.3; Preharvest sprouting, marker interval Xmtd862–Dw155 (430)
|
QTL62-5RL16
|
QPhs.uas-5R.1; Preharvest sprouting; Ot1-3, dominant gene action; marker intervals alpha-Amy3–Xis5.1, Xapr5.2–alpha-Amy3 (416,430); coincides with preharvest sprouting Phs2; marker interval Xpr215-480–Xis43-810 (473)
|
QTL83-6RS16
|
QPhs.uas-6R.2; Preharvest sprouting; marker interval Xpsr106-1–Xscm112 (430); coincides with preharvest sprouting Phs3; marker interval Xapr6.43-–Xapr6.41 (473)
|
QTL63-6RL16
|
QPhs.uas-6R.1; Preharvest sprouting; Ot1-3, dominant gene action; marker interval Xscm78–Xapr6.7, Xpsr454–XksuD2 (416,430)
|
QTL84-7RS16
|
QPhs.uas-7R.2; Preharvest sprouting; marker interval Xopq4a–Xapr7.25 (430)
|
QTL64-7RL16
|
QPhs.uas-7R.1; Preharvest sprouting; Ot1-3, recessive gene action; marker interval Xapr7.30–Xapr7.31 (416,430)
|
QTL89-1RS
|
Rooting ability, the terminal 15% of the rye 1RS arm carries gene(s) for greater rooting ability in wheat (447)
|
QTL90-7R
|
Pentosan content, confirmed after test crossing (491)
|
QTL91-3R
|
Proein content, confirmed after test crossing (491)
|
QTL92-5R
|
Protein content, confirmed after test crossing (491)
|
QTL93-6R
|
Protein content, confirmed after test crossing (491)
|
QTL94-7R
|
Protein content, confirmed after test crossing (491)
|
QTL95-1R
|
Starch content, confirmed after test crossing (491)
|
QTL96-2R
|
Starch content, confirmed after test crossing (491)
|
QTL97-3R
|
Starch content, confirmed after test crossing (491)
|
QTL98-5R
|
Starch content, confirmed after test crossing (491)
|
QTL99-7R
|
Starch content, confirmed after test crossing (491)
|
QTL100-1R
|
Thousand kernel weight, confirmed after test crossing (491,499,506)
|
QTL101-4R
|
Thousand kernel weight, confirmed after test crossing (491,499,506,520)
|
QTL102-5R
|
Thousand kernel weight, confirmed after test crossing (491,499,506)
|
QTL103-7R
|
Thousand kernel weight, confirmed after test crossing (491,506)
|
QTL104-1R
|
Test weight, confirmed after test crossing (491)
|
QTL105-4R
|
Test weight, confirmed after test crossing (491)
|
QTL106-5R
|
Test weight, confirmed after test crossing (491)
|
QTL107-7R
|
Test weight, confirmed after test crossing (491)
|
QTL108-5R
|
Tissue culture response, negative, immature embryos producing embryogenic callus (493)
|
QTL109-6R
|
Tissue culture response, negative, immature embryos producing embryogenic callus (493)
|
QTL110-1R
|
Tissue culture response, positive, immature embryos forming embryogenic callus (493)
|
QTL111-6R
|
Tissue culture response, positive, immature embryos forming embryogenic callus (493)
|
QTL112.5RL
|
Fusarium head blight severty in triticale (48% of variability) (496)
|
QTL113.3R
|
Number of spikelets per spike (499), marker XrPt505214, XrPt505592, XrPt506504
|
QTL114.5R
|
Number of spikelets per spike (499), marker XrPt347454, XrPt401454, XrPt411244, XrPt411244, XrPt398706
|
QTL115.4R
|
Number of kernels per spike (499), marker XrPt116809, XrPt508372, XrPt508372, XrPt509637, XrPt402158, XrPt402158
|
QTL116.2R
|
Kernel weight per spike (499), marker Xrpt402364, Xrpt347771, Xrpt401519
|
QTL117.3R
|
Kernel weight per spike (499), marker XrPt344420, XrPt507897, XrPt344420
|
QTL118.4R
|
Kernel weight per spike (499), marker XrPt116809, XrPt401412, XrPt508372, XrPt390758, XrPt402158, XrPt402158
|
QTL119.6R
|
Kernel weight per spike (499), marker XrPt400777, XrPt398472, XrPt400777, XrPt399985, XrPt399985, XrPt399985
|
QTL120.6R
|
Thousand kernel weight (499,506), marker XrPt399985, XrPt399985, XrPt399985
|
QTL121.5R
|
Resistance to soil-born cereal mosaic virus (511)
|
QTL122.7R
|
Resistance to wheat spindle streak mosaic virus (511)
|
QTL123.7RS
|
Aluminium tolerance (516)
|
QTL124.4R
|
Frost and cold tolerance (519)
|
QTL125.5R
|
Frost and cold tolerance (519)
|
QTL126.7R
|
Frost and cold tolerance (519)
|
QTL127.2R
|
Tan spot resistance, Pyrenophora tritici-repentis race 5 (528)
|
QTL128.5R
|
Tan spot resistance, Pyrenophora tritici-repentis race 5 (528)
|
QTL129.4R
|
Mildew resistance in triticale, adult, Qpm.gz.4R.1, 3624369: 3614262, (60.5: 93.7) (538)
|
QTL130 4R
|
Mildew resistance in triticale, adult, Qpm.gz.4R.2, 3622032: 3608596, (161.9: 217.2) (538)
|
QTL131 5R
|
Mildew resistance in triticale, adult, Qpm.gz.5R.1, 4357257: 4218107, (95.2: 109.7)538)
|
QTL132 6R
|
Mildew resistance in triticale, adult, Qpm.gz.6R.1, 4341045: rPt-506054, (55.8: 77.1) (538)
|
R, R1 >>> An5
|
|
Rc58
|
Red coleoptile (476)
|
rd
|
Reed growth habit
|
re
|
Reduced ear (361)
|
Reg
|
Red grain
|
REV139
|
Revolver; a transposon-like gene; consists of 2929-3041 bp with an
inverted repeated sequence on each end and is dispersed through all seven chromosomes (422)
|
Rf syn Rfc
|
Male fertility restorer
|
Rfc >>> Rf
|
Male fertility restorer of the Pampa cytoplasm
|
Rfg
|
Male fertility restorer of the Guelzow cytoplasm
|
Rfp1
|
Male fertility restorer from Iranian primitive population (313,403)
|
Rfp2
|
Male fertility restorer from Argentinean landrace (313,403)
|
Rfp3
|
Male fertility restorer from Iranian primitive population, Altevogt 14160 (518)
|
Rga51
|
Enhanced root growth ability in wheat (447)
|
rlt141241
|
cDNA clone from rye “Puma” highest expressed in root tissue conferring information for cold tolerance (424)
|
rlt142141
|
cDNA clone from rye “Puma” highest expressed in leaf tissue conferring information for cold tolerance (424)
|
Rm
|
Rye mildew
|
RNAse
|
RNAse
|
Rog
|
Round grain
|
rps
|
Mitochondrial genes (322), encoding the mitochondrial 18S ribosomal RNA
|
rps19
|
5'-truncated mitochondrial pseudogene co-transcribed with a downstream nad4L gene (340)
|
rr
|
Red rachis
|
rrn
|
Gene encoding the mitochondrial 18S ribosomal RNA
|
rs
|
Reduced seed set
|
3Rt58
|
Anthocyanidin-3-glucoside rhamnosyltransferase of anthocyanin biosynthesis pathway (476)
|
Tcr-n
|
Tissue culture response, negative (492)
|
Tcr-p
|
Tissue culture response, positive (492)
|
RYS1
|
A mobile element activated during tissue culture; a foldback (FB) transposon first
described in rye and also the first active plant FB transposon reported
|
S1 >>> a1
|
Vertical arrangement of leaves (371)
|
S syn Z
|
Self-incompatility (353)
|
S5 syn Sf5
|
Self-incompatibility
|
Sa65
|
Size of antheres (502)
|
Sbm
|
Soil-borne mosaic virus resistance (534)
|
Sbp syn Xpsr804
|
|
Sc
|
Color of spike
|
SCXI >>> I(scx)
|
|
Sdf
|
Soluble dietary fiber content
|
Sec...
|
Secalin (458)
|
Sec1
|
40-55 kDa ω-secalin showing 15 copies of the gene (354,458)
|
Sec1a >>> Sec1
|
|
Sec1b >>> Sec1
|
|
Sec234
|
40-75 kDa gamma-secalin (458)
|
Sec3
|
|
Sec3a >>> Sec3
|
|
Sec3b >>> Sec3
|
|
Sec4 syn Gli-R3 syn Pr
|
|
Sec5
|
40-75 kDa gamma-secalin (458)
|
Sf
|
Self-fertility
|
Si >>> Asi >>> I(as)
|
|
Skd
|
Shikimate dehydrogenase
|
sl
|
Plants without spikes and spikelets (372,373)
|
Sl
|
Length of spike (361,499)
|
sl syn sp
|
Spreading leaf
|
Sn
|
Number of spikelets per spike (361,499)
|
Sod
|
Superoxide dismutase
|
sp >>> sl
|
|
Sp syn Sp1 syn Vrn1 syn Fr1
|
Spring growth habit (361,362,438,540)
|
Spf >>> QTL13-1RS13
|
Spikelet fertility (207,361)
|
Sr
|
Resistance to stem rust (Puccinia graminis) (380)
|
Sr31
|
Resistance to stem rust (Puccinia graminis f. sp. tritici) in 1AL.1RS translocated wheat ‘Amigo’ = ‘Insave’ rye (389)
|
Sr59
|
Resistance to stem rust (Puccinia graminis f. sp. tritici) in 2DS.2RL translocated chromosome (512)
|
Sr-Ug99
|
Resistance to stem rust (Puccinia graminis f. sp. tritici, race Ug99) in 3RL telosomic chromosome (541)
|
sr >>> dr
|
|
ss1 syn Xpsr490
|
|
Ss2 syn Xpsr489
|
|
SsI(Ta)
|
Soluble starch synthetase I transporter gene (SSI) (363)
|
Ssp...12
|
Salt-soluble protein (299)
|
STOP1
|
Zn finger transcription factor SENSITIVE TO PROTON RHIZOTOXICITY1 (STOP1) plays an essential role in the adaptation of plants to Al and low pH stresses (536)
|
S/TPK
|
serine/threonine protein kinase (535); responsible for intracellular signal transduction mediated by
abscisic acid synthesized following drought stress
|
Su(cp)
|
Homoeologous pairing suppressor
|
Su(hsp)
|
Suppressor of heat shock proteins of wheat
|
Sut(Ta)
|
Sucrose transporter gene wheat, homoeologous group 4
|
Sw
|
Stem waxiness
|
sy >>> syn
|
|
sy1 = syn1 = asc115
|
(182,343,359); affects recombination events
|
sy2 = dsc115
|
|
sy3 = asc415
|
Weak asynaptic mutant (345)
|
sy2a = dsc215
|
|
sy2b = dsc315
|
|
sy6
|
Causing nonhomologous synapsis (345)
|
sy7
|
Causing nonhomologous synapsis (345)
|
sy8
|
Causing nonhomologous synapsis (345)
|
sy9 = asc215
|
connected with defects of the assembly of synaptonemal complex axial cores (474)
|
sy10 = asc315,32
|
Causing nonhomologous synapsis (345,359); coupled with the presence of protein Zyp1 in the core region. The
assembly of proteins Asy1 and Zyp1 on the axes of meiotic chromosomes was shown to occur separately, which is a specific feature of rye, as compared to arabidopsis (474)
|
sy19
|
Impairs the homology of meiotic chromosome synapsis (488)
|
syn >>> asc or dsc
|
|
T
|
Self-incompatility (353)
|
Ta(Almt1)42
|
Aluminum-activated malate transporter renamed by the authors from TaALMT1; identical or closely linked with the Alt4 locus (409,429)
|
TAM... >>> Xtam...
|
|
TBP5L/4L
|
Evolutionary translocation break point 5RL/4RL in rye (476)
|
TBP6L/3L
|
Evolutionary translocation break point 6RL/3RL in rye (476)
|
Tc
|
Color of tillers
|
Tc427
|
(363)
|
Tcr-p
|
Positive tissue culture response (492)
|
td
|
Disturbed tetrade formation
|
tg
|
Tulip growth habit
|
Thi
|
Thionin
|
ti
|
Tigrina
|
Tp
|
Transposition
|
Tpi
|
Triosephosphate isomerase
|
trnS
|
Coding for tRNASer (GCU)
|
Tr
|
Translocation breakpoint
|
Tw
|
Thousand grain weight (363,425,506)
|
Tw125
|
Thousand grain weight (363,425,506) on chromosome 5R
|
Tw225
|
Thousand grain weight (363,425,506) on chromosome 7R
|
Tyr
|
Tyrosinase
|
tys
|
transversal yellow strips on leaf (484); lethal chlorophyll mutant
|
Uba syn Xpsr860
|
|
ug
|
Production of unreduced gamtes in diploid rye (394); named by the author
|
V >>> Hg
|
|
va
|
Viridoalbina
|
vb >>> vi
|
Viridis
|
Vdac1 syn Xtav1961
|
|
Vdac2 syn Xtav1960
|
|
vi syn an
|
Viridis, virescent, anthocyaninless
|
vi1 >>> an1
|
|
Vrn >>> Sp
|
|
Vs >>> Ps
|
Violet seeds
|
w >>> wa 1
|
Waxless plant with waxy nodes
|
wa syn epr
|
|
wa1
|
Waxless plant
|
wg syn es
|
Waxless glume
|
WG... >>> Xwg...
|
|
wh
|
White
|
whg
|
White glume
|
Wsm...
|
Resistance to wheat streak mosaic virus
|
Wsp...
|
Water-soluble proteins (412)
|
wx >>> wa164
|
Waxy endosperm (455,501)
|