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Representation of repetitive element groups on 1RS, modified after Bartos et al. 2008 (453)

 

Cumulative length (bp)

Fraction of 1RS (%)

Class I elements

 

 

1,306,781

64.3

 

LTR retrotransposons

 

1,275,443

62.8

 

 

Gypsy

989,195

48.7

 

 

Copia

281,937

13.9

 

 

TRIM

281,937

13.9

 

Non-LTR retrotransposons

 

31,338

1.5

 

 

LINE

23,400

1.2

 

 

SINE

1,877

0.1

Class II elements

 

 

100,854

5.0

 

 

CACTA

90,323

4.4

 

 

Mutator

1,394

0.1

 

 

MITE

4,681

0.2

 

 

LITE

2,753

0.1

Unclassified elements

 

 

30,340

1.5

Other known repeats

 

 

106,376

5.2

 

Ribosomal genes

 

94,665

4.7

 

Simple repeats

 

5,049

0.2

 

Tandem repeats

 

6,662

0.3

Known repeats

 

 

1,536,587

75.6

Unknown repeats

 

 

178,027

8.8

Total

 

 

1,712,364

84.2

   Copyright  R. Schlegel   &   V. Korzun    2004 2005 2006 2007 2008  2009  2010 2011 2012 2013 2014 2015  2016  2017