Cumulative length (bp)

Fraction of 1RS (%)

Class I elements

1,306,781

64.3

LTR retrotransposons

1,275,443

62.8

Gypsy

989,195

48.7

Copia

281,937

13.9

TRIM

281,937

13.9

Non-LTR retrotransposons

31,338

1.5

LINE

23,400

1.2

SINE

1,877

0.1

Class II elements

100,854

5.0

CACTA

90,323

4.4

Mutator

1,394

0.1

MITE

4,681

0.2

LITE

2,753

0.1

Unclassified elements

30,340

1.5

Other known repeats

106,376

5.2

Ribosomal genes

94,665

4.7

Simple repeats

5,049

0.2

Tandem repeats

6,662

0.3

Known repeats

1,536,587

75.6

Unknown repeats

178,027

8.8

Total

1,712,364

84.2